miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|164223111|gb|EB657517.1|EB657517 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAGCACCATTACTATTCCATCAGATAACTTAGTTCCCATCATAC
AGCAAGAACACGATCAGAAAGCCCAACATCTAACTACACAATCCACTCCACCCAAATTCCTGGAACTAGCACGACTACCA
GGAGCAACAGGCCACACGAGCAGACGGGATCATCTAGGGATCATCTACGCGGAGGTGAACTTGGTGACGGCCTTGGTGCC
CTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGATGGTGG
GCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAAATGTCGTTGATGAAGGAGTTCATGATG
GACATGGCCTTGGAGGAAATGCCGATGTCGGGGTGGACCTGCTTGAGCACCTTGAAGATGTAAATCTTGTAGGTCTCCAC
CGACTTCTTCCCCTTCTTCCTCCCCCTCTTGGACTCGCCGCCCTCCTTGCCGGCGGTCTTCCCCGCGGGGAGCCGCTTCT
CGGCCTTGGGCTTCTTCCCCGCCGGAGCCTTCTCCGCCTTCTCCGTCGCGGGCTCCTCCTCCGCGGGCTTCTTCGCCGCC
GGCTTCTTCTCCGCCTTGGGGGCCATCGACTCGCTCGGGGTTGCTGTGGCTGGCTCCGGCTCGGATTTGGTTCGGTGGTT
G




Most similar to sp|Q94JJ4|H2B4_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94JJ4|H2B4_ORYSJ Histone H2B.4 OS=Oryza sativa subsp. japonica
           GN=H2B.4 PE=3 SV=1
          Length = 153

 Score =  180 bits (457), Expect = 7e-45
 Identities = 97/116 (83%), Positives = 98/116 (84%)
 Frame = -2

Query: 555 RLPAGKTAXXXXXXXXXXXXXXXXSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 376
           RLPAGK                  SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND
Sbjct: 38  RLPAGKAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 97

Query: 375 IFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 208
           IFEKLAGE+AKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA
Sbjct: 98  IFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153